PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01197.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Trihelix
Protein Properties Length: 355aa    MW: 39776.3 Da    PI: 9.7832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.9e-1546133186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ + ++pk   qCk++++ ++k+yk +k+   ++  +  s++++fd+l+
  Migut.I01197.1.p  46 CWSEAATAVLIDAWGERYLELSRGNLKQKHWKDVADIVcSREDYAKTPKtdiQCKNRIDTVKKKYKTEKAKIASG--GGPSKWRFFDKLD 133
                       7**********************************976677888777754449********************97..67778******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2544134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEDDEIQSP TPNGRITVTV ASAPPSNSLT LALPIQPQKT PGREDCWSEA ATAVLIDAWG  60
ERYLELSRGN LKQKHWKDVA DIVCSREDYA KTPKTDIQCK NRIDTVKKKY KTEKAKIASG  120
GGPSKWRFFD KLDVLIGPTP SKSNSTPPPP MDLYQRGVPM GIPVGIRSSS SVLKRPSFDS  180
EDESEPENSA DSSDGLPPDT YNNNNKRGKI QKMEMPTVNN ANGSSSQRRD GGGMRGNGRK  240
NKEESNWANS MKELTRAVLK FGEAYEQAET AKLQQLVEME KQRMKFAKEL ELQRMQYFMK  300
TQMELSQIKN RSSANTNNHH HHHHRRVISN NNNNDANNNN TKKNNNTKNS DSSN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856279.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG85e-67ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0V0I8Y81e-125A0A0V0I8Y8_SOLCH; Putative trihelix transcription factor GTL1-like
STRINGPGSC0003DMT4000884011e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-57sequence-specific DNA binding transcription factors